- Alton Elementary School
- Brenham Alternative School
- Brenham Christian Academy
- Brenham Community Education
- Brenham Elementary School
- Brenham High School
- Brenham Junior High School
- Brenham Middle School
- Brenham State School
- First Baptist Church School
- Grace Lutheran School
- Krause Elementary School
- Leap High School
- Methodist Week Day School
- St Paul's Christian Day School
- Time Well Spent
